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Hello all,
I'm having issues with Abyss-pe- when running the command
/home/bstamps/Abyss/bin/abyss-pe np=64 k=32 n=10 in='/scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R1_001.fastq /scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R2_001.fastq' -C /home/bstamps/Genomics_Assembly/Salcha1_150bp/150bp_ABySS name=salcha
from within a BSUB script, the command completes but only outputs
make: Entering directory `/home/bstamps/Genomics_Assembly/Salcha1_150bp/150bp_ABySS'
make: Nothing to be done for `/scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R2_001.fastq'.
Again and again and again. Is this an issue with abyss-pe, my handling of the input parameters, or other?
I'm having issues with Abyss-pe- when running the command
/home/bstamps/Abyss/bin/abyss-pe np=64 k=32 n=10 in='/scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R1_001.fastq /scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R2_001.fastq' -C /home/bstamps/Genomics_Assembly/Salcha1_150bp/150bp_ABySS name=salcha
from within a BSUB script, the command completes but only outputs
make: Entering directory `/home/bstamps/Genomics_Assembly/Salcha1_150bp/150bp_ABySS'
make: Nothing to be done for `/scratch/bstamps/Salcha1/BS-salcha_CGATGT_L001_R2_001.fastq'.
Again and again and again. Is this an issue with abyss-pe, my handling of the input parameters, or other?