Hi All,
I'm fairly new to sequencing and analysis of sequeincing data.
I've sequenced using the Ion Torrent Proton and I have a tumor and am comparing it to sequenced PBMC data from the same patient.
I'm looking for indels, snps and just trying to figure out what pathways may be affected by mutations in the cancer tumor.
What would be your workflow in general starting from the BAM file?
I'm using command line to analyse the data - what tools, or what would you use?
Thanks for any helpful suggestions!
Leo
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Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.
Long-Read Sequencing
Long-read sequencing has seen remarkable advancements,...12-02-2024, 01:49 PM