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  • Request for Example of "consensus diploid sequence" required by PSMC (Li & Durbin)

    Hi all,

    I would like to have a quick look at an example of the fasta-like format generated by "fq2psmcfa" and required by PSMC. See below:

    "Program `fq2psmcfa' transforms the consensus sequence into a fasta-like format where the i-th character in the output sequence indicates whether there is at least one heterozygote in the bin [100i, 100i+100)."

    Do anyone could provide an example for a heterozygous and a homozygous bin?

    Thanks in advance,
    FCR

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