Hi all
I am working with transcriptomic data generated by solexa, and i am using TopHat for mapping. I am trying to run the program with a GFF file in order to obtain gene expresion indices (-G option) but the program seems to not recognize none of the GFF files i specify. Does anyone know the structure of the GFF file appropiate for TopHat in order to do the mapping?
Regards
I am working with transcriptomic data generated by solexa, and i am using TopHat for mapping. I am trying to run the program with a GFF file in order to obtain gene expresion indices (-G option) but the program seems to not recognize none of the GFF files i specify. Does anyone know the structure of the GFF file appropiate for TopHat in order to do the mapping?
Regards
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