Thanks Simon,
geneExpFile <- system.file("extdata", "GeneExpExample5000.txt",+ package = "DEGseq")
should be
geneExpFile <- system.file("extdata", "GeneExpExample5000.txt", package = "DEGseq")
SO, I just removed the + sign )
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Originally posted by Amative View PostThen this:
>geneExpFile <- system.file("extdata", "GeneExpExample5000.txt",+ package = "DEGseq")
I had a similar problem when I started with R and DEGseq.
There is a problem where the R syntax and the DEGseq tutorial collide.
So in R on the console every line begins with a ">" However you never input this character, it's just there. If you then type a multilin statement, R shows by a "+" that this line is just continuing the line above.
Therefore if you copy and paste the examples, you have to remove the > and + characters, as in:
geneExpFile <- system.file("extdata", "GeneExpExample5000.txt", package = "DEGseq")
Also "r getting started" is a good google query to get started with R.
Best,
Simon
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Degseq Question
Hello All,
I am new here in this awesome forum, new to the topics you guys talking about as well. I've read about Degseq and I'm trying to work on it. So, I have installed the R and Degseq and now as a beginner I am working on the example provided in their manual with sample data that comes with Degseq. they started the example with the following command, which went fine:
> library(DEGseq)
Then this:
>geneExpFile <- system.file("extdata", "GeneExpExample5000.txt",+ package = "DEGseq")
This one keeps returns this error msg:
Error: unexpected '=' in "geneExpFile <- system.file("extdata", "GeneExpExample5000.txt",+ package ="
Any Help is appreciatedTags: None
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