Announcement

Collapse

Welcome to the New Seqanswers!

Welcome to the new Seqanswers! We'd love your feedback, please post any you have to this topic: New Seqanswers Feedback.
See more
See less

Pipeline + test datset for RNAseq with ERCC controls?

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Pipeline + test datset for RNAseq with ERCC controls?

    I'm putting together a pipeline to automate the process of analysing ERCC spike-in RNA controls in an RNAseq experiment. Just wondering if anyone is aware of publically available test datasets that could be used for this?
    e.g. an Illumina / Ion torrent /454 RNAseq run where the ERCC controls have been added?
    EDIT: answered my own question: just go to the SRA and search for "ERCC".
    Curious if anyone has established pipelines to automate analysis of ERCC controls?
    Last edited by danwiththeplan; 03-10-2013, 02:03 PM.
Working...
X