Software for splicing sites dectection using RNA-seq?

[fabrice]

Dear expert,

Are there any software to detect splice sites/events using RNA-seq?

Thank you.

MATS:

http://rnaseq-mats.sourceforge.net/user_guide.htm

SpliceSeq
SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts

[metheuse]

I'm also looking for the same thing. These are some of the software I found that are related to splicing detection. I'm eager to know which of them have been compared and which one(s) perform better:
1. Cufflinks
2. DEXSeq
3. MapSplice
4. AStalavista
5. Flux Capacitor
6. SOAPsplice
7. HMMSplicer
8. MISO
9. MATS
10. SplicingCompass
11. SpliceTrap
12. SeqMonk
13. SpliceSeq

[fabrice]

14. SplitSeek

It seems it is hot field.