14. SplitSeek
It seems it is hot field.
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I'm also looking for the same thing. These are some of the software I found that are related to splicing detection. I'm eager to know which of them have been compared and which one(s) perform better:
1. Cufflinks
2. DEXSeq
3. MapSplice
4. AStalavista
5. Flux Capacitor
6. SOAPsplice
7. HMMSplicer
8. MISO
9. MATS
10. SplicingCompass
11. SpliceTrap
12. SeqMonk
13. SpliceSeqLeave a comment:
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Software for splicing sites dectection using RNA-seq?
Dear expert,
Are there any software to detect splice sites/events using RNA-seq?
Thank you.
MATS:
SpliceSeq
SpliceSeq: A Resource for Analysis and Visualization of RNA-Seq Data on Alternative Splicing and Its Functional Impacts
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The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...02-24-2025, 06:31 AM
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