I'm using Galaxy to analyze RNAseq results for differential gene expression in Drosophila mel.
In tophat2, it says that I can supply a gene annotation model by uploading the file.
Where do I get the file? Obviously, drosophila melanogastor has an annotated genome, but when I go to download it, I don't know what I'm looking for. There are so many files. (http://flybase.org/static_pages/docs/datafiles.html#)
There's genes, insertions, alleles... is it all of them? or is there a complete file?
In tophat2, it says that I can supply a gene annotation model by uploading the file.
Where do I get the file? Obviously, drosophila melanogastor has an annotated genome, but when I go to download it, I don't know what I'm looking for. There are so many files. (http://flybase.org/static_pages/docs/datafiles.html#)
There's genes, insertions, alleles... is it all of them? or is there a complete file?
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