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  • ozs2006
    started a topic alternative splicig from cuffdiff

    alternative splicig from cuffdiff

    I heard Adam Roberts's lecture in Weizmann institute (Israel) yesterday
    I have some questions about Alternative splicing analysis from cuffdiff:

    1. How to understand intutively the sqrt(jensen-shannon distance)?

    2. Why to use sqrt(jansen-shannon distance) and not splicing-index method like in all-exon microarray?

    3. what is the best way in cufflinks to get alternative splicing (at first I want to get only known-alternative-splicing events)?
    Last edited by ozs2006; 06-06-2011, 02:45 AM. Reason: misspelling

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