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  • #16
    To extract the comment lines (and thus the lines with 0 hits), you could use:
    Code:
    awk '/^\#/' file > newfile
    If you want only the 'Query' line, then you could use the following instead:
    Code:
    awk '/^\# Query/{print $0}' file > new file
    Last edited by jmjensen; 06-01-2013, 12:59 AM.

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    • #17
      Originally posted by JonB View Post
      Any good tips on how to directly extract the queries with no hits?
      cut -f 1 your_outfmt6_output_file.txt | sort -u > hitlist.txt

      and then use this script or something similar on your query file.
      Last edited by rhinoceros; 06-01-2013, 04:43 AM.
      savetherhino.org

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