PRINSEQ and paired-end data

[Rockx]

Hi, I am using PRINSEQ to separate reads of differing GC content, however I have noticed that it doesn't deal with paired-end data.

Is there any software that can separate reads based on GC using paired-end data?

Thanks.

[Ambily]

Hi,

I have the same query too. Could you please let me know if you managed to find a solution ?

Best regards,
Ambily