I have a bunch of mutations with Ensembl annotations for gene name and I am trying to run CHASM:
It requires mutations defined as amino-acid residue substitutions, along with an accession identifier from NCBI RefSeq, CCDS, or Ensembl in the following format.
NP_001135977 R641W
NP_835455 R151C
NP_055645 L590V
NP_689808 D28H
NP_005472 S372R
Can somebody help me how to get this annotation (as amino-acid residue substitutions and accession identifier) for my Ensembl mutation list?
Thanks
-Kasthuri
It requires mutations defined as amino-acid residue substitutions, along with an accession identifier from NCBI RefSeq, CCDS, or Ensembl in the following format.
NP_001135977 R641W
NP_835455 R151C
NP_055645 L590V
NP_689808 D28H
NP_005472 S372R
Can somebody help me how to get this annotation (as amino-acid residue substitutions and accession identifier) for my Ensembl mutation list?
Thanks
-Kasthuri
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