Announcement

Collapse
No announcement yet.

Chasm

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Chasm

    I have a bunch of mutations with Ensembl annotations for gene name and I am trying to run CHASM:

    http://wiki.chasmsoftware.org/index....ration_Options

    It requires mutations defined as amino-acid residue substitutions, along with an accession identifier from NCBI RefSeq, CCDS, or Ensembl in the following format.

    NP_001135977 R641W
    NP_835455 R151C
    NP_055645 L590V
    NP_689808 D28H
    NP_005472 S372R

    Can somebody help me how to get this annotation (as amino-acid residue substitutions and accession identifier) for my Ensembl mutation list?

    Thanks
    -Kasthuri

  • #2
    You can use online version of Chasm. If you have annotated vcf file.

    If the file is of few mega bytes ~80-100 mbs, you would have your output in less than 30 mins.
    Bioinformaticscally calm

    Comment

    Working...
    X