Hello,
I am using GASV with my own genome, so I need to put the parameter -CHROMOSOME_NAMING, where I put one file called scaffold.txt with this format:
scaffold_1
scaffold_2
scaffold_3
scaffold_4
scaffold_5
scaffold_6
scaffold_7
scaffold_8
scaffold_9
scaffold_10
...
Acording to my results ("filename"_all.deletion):
3033874 3033974 + HWI-ST700660_99:2:1101:7692:3237#4@0 3034425 - 3034325
the format should be wrong because there is no information of the scaffold.
could you help me, please?
Thanks!
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