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htseq-count reads the SAM file line by line and hence, it should not care how big it is, because it only looks at one line at a time. Please post a transcript of your session, with the full error message. -
What input? I cannot imagine that you have a GTF file with 5 GB size. Are you sure you removed any FASTA lines that may have been appended to it?Leave a comment:
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htseq-count INPUT to big.
My htseq-count script stops because input is too big (5gb), are there ways to overcome this?
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Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.
Long-Read Sequencing
Long-read sequencing has seen remarkable advancements,...12-02-2024, 01:49 PM
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