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Let's simplify the question a bit. There are WIG files from ENCODE available at the UCSC Genome Browser, but there are no BED files. I also did not find BED files with TF enrichments from ENCODE in the GEO archive. Does anyone know where it is possible to get the ENCODE BED files with TF enrichments? -
How to get TF binding sites from the ENCODE data?
Hello,
I am trying to extract the coordinates of TF binding sites from the ENCODE data, but have now realized that they only report broad peaks (~1000 bp) and not the exact binding sites. Is there an easy way to get the BED files with exact binding site coordinates from these data? (by exact I mean at least 10 bp resolution).
Thanks!Last edited by rebrendi; 03-27-2012, 12:18 PM.
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