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  • Version of hg19 assembly

    Hi,
    I have hg19.fasta reference file from ftp://ftp.broadinstitute.org/bundle/1.5/hg19/. How can I realize, which version of assembly I have?
    On this page http://www.ncbi.nlm.nih.gov/projects...ta/index.shtml I can switch between GRCh37.p5, GRSh37.p6 and so on.
    I'd like to see a statistics of my particular reference.

    Edit:
    To gain the reference go to ftp://[email protected] then bundle > 1.5 > hg19
    Last edited by thedamian; 04-11-2012, 04:17 AM.

  • #2
    I don't think it matters for the majority of the genome, just the unassembled contigs. If somebody knows differently please speak up. I was hopeful that the later releases would "fix" some of the misassigned reference bases, but that didn't appear to be the case to me the one time I looked.

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