Trouble UpLoading BAM file to Galaxy

[GenoMax]

If this is sensitive/patient research data then you should consider setting up a local instance of galaxy rather that using the main galaxy site.

I am sure you have seen the disclaimer on the galaxy site about protected research data but just in case ....

[qnc]

Looking at other threads it might be a fire wall problem.

Is there any other site to host BAM and other large files on?

One without download restrictions?

Will check on the UCL Firewall status etc...

Thanks

[GenoMax]

The problem may be on your end. I can't access the file from the link you have provided for the bam file. Perhaps the firewall on your machine is preventing file access from outside.

[qnc]

Hi I have been trying to upload this bam file

http://slm22.ioo.ucl.ac.uk/~qncwork/Vanita-Ori.bam

Which is located on this page

http://slm22.ioo.ucl.ac.uk/~qncwork/

All I get is:
"http://slm22.ioo.ucl.ac.uk/~qncwork/Vanita-Ori.bam
An error occurred setting the metadata for this dataset. You may be able to set it manually or retry auto-detection.
error
format: bam, database: hg19
Info: Unable to fetch http://slm22.ioo.ucl.ac.uk/~qncwork/Vanita-Ori.bam
[Errno socket error] [Errno 110] Connection timed out"

I am happy to try UCSC but wanted to get a Variant's file from it to pass in Seatle Seq or something similar.

Then ultimately wanted to map any likely changes on UCSC with a MAF file.

But happy to look at the first stage which is getting BAM files uploaded.

Happy to look at other BAM analysis tools as well.

Can anyone help?