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Publicly available strand-specific RNA-Seq data for MAQC samples?

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  • Publicly available strand-specific RNA-Seq data for MAQC samples?

    Hi,

    Is there publicly available strand-specific RNA-Seq data for the MAQC samples?

    It seems that there are people who have done this (http://www.nugeninc.com/nugen/index....brary-systems/), but I don't know if there are publicly available data that I can download.

    Thanks!

  • #2
    Strand-specific RNA-Seq data

    As you indicate in the link to the NuGEN product web page we have generated strand-specific RNA-Seq data using our Encore Complete RNA-Seq Library System. We do make this data available upon request, so please contact me if you are interested in receipt of this data.

    Regards,
    Steve Kain
    [email protected]

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    • #3
      Hi Steve,

      I'm more interested in using paired-end reads of the samples, do you have them available, too?

      Thanks!

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      • #4
        I believe Illumina's Human Body Map data is stranded. Have you tried searching NCBI's SRA?

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        • #5
          Hi golharam,

          I'm currently working on a method for RNA-Seq data analysis, so I'd like to use the MAQC samples where I can verify my method easily with qRT-PCR or microarray data.

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