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  • Heisman
    replied
    I can't remember off the top of my head. Could you copy and paste the text where it says "ignored" (and if it's associated with a specific input line, copy and paste that as well).

    Leave a comment:


  • dkrtndhkd
    replied
    Thank you

    and futher question...

    the word 'ignored' means that Annovar didn't annotate any gene name and just deleted the SNP??

    Leave a comment:


  • Heisman
    replied
    I'm pretty sure that's in reference to sequences it loads from its own databases; nothing to do with your samples. I wouldn't worry about it.

    Leave a comment:


  • dkrtndhkd
    started a topic annovar output - question

    annovar output - question

    I run annovar to annotate my snp file.

    I saw this message:

    WARNING: A total of 273 sequences will be ignored due to lack of correct ORF annotation

    somebody please let me know what's the meaning?

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