Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • snp call in Repeat Masked region

    GATK gave me around 3.2 million SNPs, and I overlapped the SNPs with regions identified by repeatMasker, and found half are affected by RepeatMasker-defined repeats. I am just wondering if it is necessary to exclude the SNPs marked by repeat masker, or shall I just go with the SNPs passed the GATK filters? What's the common practice regarding this issue?

    Thank you for your advice

Latest Articles

Collapse

  • seqadmin
    Genetic Variation in Immunogenetics and Antibody Diversity
    by seqadmin



    The field of immunogenetics explores how genetic variations influence immune responses and susceptibility to disease. In a recent SEQanswers webinar, Oscar Rodriguez, Ph.D., Postdoctoral Researcher at the University of Louisville, and Ruben Martínez Barricarte, Ph.D., Assistant Professor of Medicine at Vanderbilt University, shared recent advancements in immunogenetics. This article discusses their research on genetic variation in antibody loci, antibody production processes,...
    Today, 07:24 PM
  • seqadmin
    Choosing Between NGS and qPCR
    by seqadmin



    Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...
    10-18-2024, 07:11 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 11-01-2024, 06:09 AM
0 responses
24 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-30-2024, 05:31 AM
0 responses
21 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-24-2024, 06:58 AM
0 responses
25 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-23-2024, 08:43 AM
0 responses
55 views
0 likes
Last Post seqadmin  
Working...
X