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  • soap2 and SOAPsnp -some prolblems

    Hi guys,

    I have two questions:
    My reads data is 33-based format.
    1, Does soap2 only suppot 64-based fastq format reads? Do I have to change my data from 33-based to 64-based manually? I have huge data.

    2, Is that ok if I soap2 my data with default 33-based fastq and then SOAPsnp with paramater "-z !" ?

    Thanks!
    Josh

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