Thanks Seb,
I used the unused read option when I read velvet manual again.
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Hello,
You can get unassembled reads by adding -unused_reads yes to the velvetg
computer program.
For metagenome assembly, you can also try Ray (version v2.0.0-rc8).
I am one of the authors of Ray.
See http://denovoassembler.sf.net
We will submit a manuscript this week about metagenome assembly and coupled profiling with Ray.
SébLeave a comment:
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how to get the reads which are not assembled in velvet
Hi Everyone,
I am new to NGS, I have assembled contigs of the metagenome data using velvet, I want to know how to get the reads which were not used in the assmbely of contigs.
Thanks!!!
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