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  • elfuser
    replied
    I changed the header in the file bwaseqio.c and it worked! Thanks

    Leave a comment:


  • elfuser
    replied
    In which file should I make this change.

    Leave a comment:


  • Richard Finney
    replied
    Check this out : http://stackoverflow.com/questions/2...-c-header-file

    Maybe you need to include this line:
    #include <stddef.h>

    Leave a comment:


  • elfuser
    started a topic Installing bwa in Fedora 10

    Installing bwa in Fedora 10

    Im trying to install BWA in a Fedora 10 64 bit machine
    and I run the following commands:
    Code:
    tar xvjf bwa-0.6.1.tar.bz2
    make
    I get the following error:
    Code:
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   QSufSort.c -o QSufSort.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwt_gen.c -o bwt_gen.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   utils.c -o utils.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwt.c -o bwt.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwtio.c -o bwtio.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwtaln.c -o bwtaln.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwtgap.c -o bwtgap.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   is.c -o is.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bntseq.c -o bntseq.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwtmisc.c -o bwtmisc.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwtindex.c -o bwtindex.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   ksw.c -o ksw.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   stdaln.c -o stdaln.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   simple_dp.c -o simple_dp.o
    gcc -c -g -Wall -O2 -DHAVE_PTHREAD   bwaseqio.c -o bwaseqio.o
    In file included from bwtaln.h:6,
                     from bwaseqio.c:4:
    bwt.h:61: error: expected specifier-qualifier-list before ‘size_t’
    make: *** [bwaseqio.o] Error 1
    Any clues?

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