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  • A problem when I install samtools

    When I complie samtools, there is a problem:

    make[1]: Entering directory '/database/yuhao/CNV/CNVnator_v0.2.5/src/samtools-0.1.6'
    gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1 bgzf.c -c bgzf.c
    /ngs/self-software/gcc4.6.2/libexec/gcc/x86_64-unknown-linux-gnu/4.6.2/cc1:error while loading shared libraries: libmpc.so.2: cannot open shared object file:No such file or directory
    make[1]: ***[bgzf.o] Error 1
    make[1]: Leaving directory '/database/yuhao/CNV/CNVnator_v0.2.5/src/samtools-0.1.6'
    make: *** [all-recur] Error 1

    Can anyone tell me how to solve this problem?

  • #2
    From the error report, you need install libmpc.so.2.

    Comment


    • #3
      Thanks!

      I have more questions related to this, my LD_LIBRARY_PATH is:

      LD_LIBRARY_PATH=/opt/gridengine/lib/lx26-amd64:database/yuhao/CNV/root/lib

      so which directory I should install the libmpc.so.2 in?

      I can't find the way to install libmpc.so.2, could you give me an adivse?Thanks so much!

      Comment

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