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Using Cytoscape in command lines

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  • Using Cytoscape in command lines

    Hi,

    I would like to use Cytoscape in command lines with a simple table file. The documentation is really poor concerning the command lines, there is no example.

    Does anyone ever try to use this software in command line ?

    I tried this :

    java -Xmx512M -jar cytoscape.jar -m table_file

    i think it works because Cytoscape starts correctly but there is no network, just a blue page

    Thank you
    Last edited by RTK45; 07-05-2012, 07:26 AM.
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