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  • mathew
    started a topic hg 19 full and canonical

    hg 19 full and canonical

    I have done an RNA-seq run on solexa and was wondering should I use reference genome canonical or full. To explain it further e.g between human hg18 full and canonical references- hg 18/19 with mt, male or female which should be best for RNA-seq. My guess is full (which will have all canonical as well as non canonical)
    Any suggestion/ feedback
    Thanks

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