I have trouble understand which reads are single reads and which are pair ended reads
For example, there are three files in
ftp://ftp.1000genomes.ebi.ac.uk/vol1...sequence_read/
SRR035330_1.filt.fastq.gz
SRR035330_2.filt.fastq.gz
SRR035330.filt.fastq.gz
I checked the sequence index and they are all supposedly PAIR_ENDED. I think SRR035330_1.filt.fastq.gz and SRR035330_2.filt.fastq.gz constitute one pair. I think I can run them thru bwa to get two sai files and go from there.
But what is SRR035330.filt.fastq.gz??? Is it really pair ended reads? Or is it single reads?
Thanks a lot!
For example, there are three files in
ftp://ftp.1000genomes.ebi.ac.uk/vol1...sequence_read/
SRR035330_1.filt.fastq.gz
SRR035330_2.filt.fastq.gz
SRR035330.filt.fastq.gz
I checked the sequence index and they are all supposedly PAIR_ENDED. I think SRR035330_1.filt.fastq.gz and SRR035330_2.filt.fastq.gz constitute one pair. I think I can run them thru bwa to get two sai files and go from there.
But what is SRR035330.filt.fastq.gz??? Is it really pair ended reads? Or is it single reads?
Thanks a lot!
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