Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Newbler exit status 9 error

    Hi all

    I am using Newbler 2.7 to asembly 454 and pair-end illumina sequences (runAssembly -cdna -mi 60 -short -cpu 48), but he has stoped with this message:

    Error: An internal error (exit status 9) has occurred in the computation.
    Please report this error to your customer support representative.

    Could you help me with any suggestion?.

    Thanks

  • #2
    I've seen this happen before when combining 454 data with other data (Sanger, Illumina).

    Does it occur if you don't include the Illumina reads?

    Try "-large" to speed it up more too during the testing phase.

    Comment


    • #3
      Originally posted by Torst View Post
      I've seen this happen before when combining 454 data with other data (Sanger, Illumina).

      Does it occur if you don't include the Illumina reads?

      Try "-large" to speed it up more too during the testing phase.
      Thanks Torst,

      But it seems that was a memory problem caused by other process. The newbler is running now without error from Thursday. The last message was the Thursday:

      Building a tree for 284746760 seeds...
      Computing alignments...
      -> 44327000 of 44502441

      Do you known if this is normal?

      Thanks

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Advanced Tools Transforming the Field of Cytogenomics
        by seqadmin


        At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
        09-26-2023, 06:26 AM
      • seqadmin
        How RNA-Seq is Transforming Cancer Studies
        by seqadmin



        Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
        09-07-2023, 11:15 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 09-29-2023, 09:38 AM
      0 responses
      10 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-27-2023, 06:57 AM
      0 responses
      13 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-26-2023, 07:53 AM
      0 responses
      30 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 09-25-2023, 07:42 AM
      0 responses
      18 views
      0 likes
      Last Post seqadmin  
      Working...
      X