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What is the average coverage with good quality of whole genome sequence in read numbers (100 bp/read) and base pairs?
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Based on these experiments and their callability calculations, the authors estimate that generating 50x mapped coverage (60x before read mapping/filtering are applied) renders ~95% of the genome and ~81% of the exome callable. Intriguingly, however, the authors note that they’d sequenced an unrelated sample using the latest HiSeq chemistry and basecalling software, achieving the same level of callability with just 35x mapped coverage. If anything, this emphasizes that (as the authors suggest), a “callability” metric is far more informative to report when describing the resequencing of human genomes.
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Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...09-07-2023, 11:15 PM -
Ribonucleic acid (RNA) represents a range of diverse molecules that play a crucial role in many cellular processes. From serving as a protein template to regulating genes, the complex processes involving RNA make it a focal point of study for many scientists. This article will spotlight various methods scientists have developed to investigate different RNA subtypes and the broader transcriptome.
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