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  • how to get kingdom counts from a list of species

    Hello,

    I need to look at the contamination percentage of some genome sequencing data. I got a list of species from blastn hits. I am wondering whether there are some softwares can group the species to the plant, animal, and bacteria, and give the counting numbers, or I have to do it manually? THank you very much for your help.

  • #2
    Qiime, MEGAN, etc

    There are quite a few different software packages that can do bacterial diversity profiling at various taxonomic levels. Have a search around

    Comment


    • #3
      MEGAN worked well. Thank you very much, jimmybee

      Originally posted by jimmybee View Post
      Qiime, MEGAN, etc

      There are quite a few different software packages that can do bacterial diversity profiling at various taxonomic levels. Have a search around

      Comment

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