Originally posted by jimmybee
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Qiime, MEGAN, etc
There are quite a few different software packages that can do bacterial diversity profiling at various taxonomic levels. Have a search aroundLeave a comment:
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how to get kingdom counts from a list of species
Hello,
I need to look at the contamination percentage of some genome sequencing data. I got a list of species from blastn hits. I am wondering whether there are some softwares can group the species to the plant, animal, and bacteria, and give the counting numbers, or I have to do it manually?
THank you very much for your help.
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The COVID-19 pandemic highlighted the need for proactive pathogen surveillance systems. As ongoing threats like avian influenza and newly emerging infections continue to pose risks, researchers are working to improve how quickly and accurately pathogens can be identified and tracked. In a recent SEQanswers webinar, two experts discussed how next-generation sequencing (NGS) and machine learning are shaping efforts to monitor viral variation and trace the origins of infectious...03-24-2025, 11:48 AM -
This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.
The Headliner
The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...03-03-2025, 01:39 PM
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