how to get kingdom counts from a list of species

[mkdir]

Hello,

I need to look at the contamination percentage of some genome sequencing data. I got a list of species from blastn hits. I am wondering whether there are some softwares can group the species to the plant, animal, and bacteria, and give the counting numbers, or I have to do it manually? THank you very much for your help.

[jimmybee]

Qiime, MEGAN, etc

There are quite a few different software packages that can do bacterial diversity profiling at various taxonomic levels. Have a search around

[mkdir]

MEGAN worked well. Thank you very much, jimmybee

Qiime, MEGAN, etc

There are quite a few different software packages that can do bacterial diversity profiling at various taxonomic levels. Have a search around