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  • merging bam files with samtools

    Hi,

    I'm using merge option in samtools for merging bam files. Just one query, do I need to first sort each bam file before merging or I've to sort the merged bam file?
    Thanks,

  • #2
    My understanding is that you should perform all upstream processing (e.g. merging, fixing headers, etc) and then sort. As the output from some functions are unsorted.
    Petri Dish Talk

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    • #3
      Is there any more input?
      Thanks,

      Comment


      • #4
        I think, any option can be taken as the results are same.
        Thanks,

        Comment

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