Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • error in Cufflinks v2.0.2 when using Cuffmerge

    When I run Cuffmerge, I receive the following error:
    You are using Cufflinks v2.0.2, which is the most recent release.
    Error creating output file tmp_meta_asm.stats!
    [FAILED]
    Error: could not execute cuffcompare

    No merged.gtf file is being produced, but genes.fpkm_tracking, isoforms.fpkm_tracking, skipped.gtf and transcritps.gtf are all being produced.

    I am running on SUSE Linxux, Linux version 2.6.32.59-0.3-default.

  • #2
    I had the same problem when I used the option -o to specify a path to the output folder.. If I changed to the wished directory before running cuffmerge it worked (i.e. I omitted the -o option)

    Soren

    Comment


    • #3
      Thanks. I had the same problem again, and I just re-ran the cuffmerge command in the cuffmerge output folder it had created in the first try.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Exploring the Dynamics of the Tumor Microenvironment
        by seqadmin




        The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...
        07-08-2024, 03:19 PM
      • seqadmin
        Exploring Human Diversity Through Large-Scale Omics
        by seqadmin


        In 2003, researchers from the Human Genome Project (HGP) announced the most comprehensive genome to date1. Although the genome wasn’t fully completed until nearly 20 years later2, numerous large-scale projects, such as the International HapMap Project and 1000 Genomes Project, continued the HGP's work, capturing extensive variation and genomic diversity within humans. Recently, newer initiatives have significantly increased in scale and expanded beyond genomics, offering a more detailed...
        06-25-2024, 06:43 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 07-10-2024, 07:30 AM
      0 responses
      29 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-03-2024, 09:45 AM
      0 responses
      201 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-03-2024, 08:54 AM
      0 responses
      212 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-02-2024, 03:00 PM
      0 responses
      193 views
      0 likes
      Last Post seqadmin  
      Working...
      X