HGVS to hg19 conversion

[thedamian]

Hi,

Is there any command line tool or method that allow for an easy translation from HGVS to hg19 coordinates?
for example:

as an inptu I'd like to provde: NM_001100.3:c.7G>T and the output should be like hg19:229568857:229568858.

Thanks in advance

[BAMseek]

Take a look at Mutalyzer . I copied and pasted "NM_001100.3:c.7G>T" into the box and get NC_000001.10:g.229568856C>A as the result.

Justin

[thedamian]

Seems promising. I will examine Web Serivices they provide.
Thank you