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  • AllPaths 2

    hello all,

    i'm looking for a good denovo assembler for solexa data. Currently I am attempting to get AllPaths2 running. I have compiled it and set up my data according to the manual. However when i run allpaths i get tje following error

    Fatal error (pid=7368) at Wed Nov 25 17:18:44 2009:
    I was hoping that /GFM4_data/ploidy was a regular file, but apparently it isn't. Perhaps it doesn't exist at all.


    the ploidy file does infact exist and contains 1 number.
    So Before I totally give up on AllPaths has anybody encountered this problem and if so have they resolved it.

    regards

    Brian

  • #2
    Allpaths2

    Hi coldturkey
    I am also trying to run allpaths and got the same problem that says ploidy file was a regular file and but apparently it isn't. Perhaps it doesn't exist at all.

    Hope you have solved this problem. Please tell me how to solve this. Currently i am running different assembler and i find this allpaths is most difficult.

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