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  • ashutosh
    started a topic How to measure percent of reference covered

    How to measure percent of reference covered

    I am currently working with assembly programs and most of the assemblers output max contig length and N50. But many papers also report percent of reference genome covered by the contigs in their results. So if I have a set of contigs and a reference genome then how can I measure the percent of reference genome covered by the contigs of length greater than say x. I used NUCMER but I can get a delta or coords file as an output but not the exact percentage. Anyone knows of any tool which can output this parameter?

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  • seqadmin
    Multiomics Techniques Advancing Disease Research
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    New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

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