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  • zgtmann
    replied
    Hello,

    did you find some algorithm for extract gaps from .sam to bed? Could you post it here,please..

    Thanks,

    Petr.

    Leave a comment:


  • Petrichor
    started a topic How do i get the gap position from my .sam file?

    How do i get the gap position from my .sam file?

    Hi there!

    For research purpose i need all the positions of gaps in my .sam file.
    I took a look at them with Tablet, but i need the gaps as an extra file.

    Is there an automatic way to do so, or do i have to do this manually?

    Best regards,
    Petrichor

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