Hello! everyone.
I am working on the Hiseq PE (DNA) data, and some samples have 100bp PE and other samples have 90bp PE. So my question is if we can use those data for analysis in one experiment and same methods without any processing (after QC), or we can trim the different length to the same length such as 70bp, then analysis them using same methods. So which method is better?
Thank you!
I am working on the Hiseq PE (DNA) data, and some samples have 100bp PE and other samples have 90bp PE. So my question is if we can use those data for analysis in one experiment and same methods without any processing (after QC), or we can trim the different length to the same length such as 70bp, then analysis them using same methods. So which method is better?
Thank you!
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