picard installation on ubuntu 12.0.4

[cmccabe]

picard installation on ubuntu 12.0.4

Thank you very much.

[GenoMax]

Look for picard-tools under /usr/bin/picard-tools.

You can run the program by doing

picard-tools COMMAND options

Do

man picard-tools

to get help on available commands.

[cmccabe]

picard installation on ubuntu 12.0.4

Seems like picard installed but I do not see a directory: Thank you.
dnascopev@ubuntu:~$ sudo apt-get install picard-tools
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
libavutil51 libqt4-test libqt4-designer python-mutagen libfftw3-3
libavcodec53 libqt4-help python-qt4 python-sip libvpx1 libgsm1
libqtassistantclient4 libschroedinger-1.0-0 libavformat53 libva1
libqt4-scripttools libqtwebkit4 libofa0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
ca-certificates-java icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
icedtea-netx-common java-common libatk-wrapper-java libatk-wrapper-java-jni
libgif4 libnss3-1d libsam-java openjdk-6-jre openjdk-6-jre-headless
openjdk-6-jre-lib ttf-dejavu-extra tzdata-java
Suggested packages:
default-jre equivs icedtea-plugin sun-java6-fonts fonts-ipafont-gothic
fonts-ipafont-mincho ttf-telugu-fonts ttf-oriya-fonts ttf-kannada-fonts
ttf-bengali-fonts r-base-core
The following NEW packages will be installed:
ca-certificates-java icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
icedtea-netx-common java-common libatk-wrapper-java libatk-wrapper-java-jni
libgif4 libnss3-1d libsam-java openjdk-6-jre openjdk-6-jre-headless
openjdk-6-jre-lib picard-tools ttf-dejavu-extra tzdata-java
0 upgraded, 17 newly installed, 0 to remove and 2 not upgraded.
Need to get 8,186 B/38.0 MB of archives.
After this operation, 99.4 MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://archive.ubuntu.com/ubuntu/ precise/main ca-certificates-java all 20110912ubuntu6 [8,186 B]
Fetched 8,186 B in 0s (41.6 kB/s)
Selecting previously unselected package openjdk-6-jre-lib.
(Reading database ... 167326 files and directories currently installed.)
Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b27-1.12.5-0ubuntu0.12.04.1_all.deb) ...
Selecting previously unselected package libnss3-1d.
Unpacking libnss3-1d (from .../libnss3-1d_3.14.3-0ubuntu0.12.04.1_amd64.deb) ...
Selecting previously unselected package ca-certificates-java.
Unpacking ca-certificates-java (from .../ca-certificates-java_20110912ubuntu6_all.deb) ...
Selecting previously unselected package tzdata-java.
Unpacking tzdata-java (from .../tzdata-java_2012e-0ubuntu0.12.04.1_all.deb) ...
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Unpacking libgif4 (from .../libgif4_4.1.6-9ubuntu1_amd64.deb) ...
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Selecting previously unselected package libatk-wrapper-java.
Unpacking libatk-wrapper-java (from .../libatk-wrapper-java_0.30.4-0ubuntu2_all.deb) ...
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Unpacking libatk-wrapper-java-jni (from .../libatk-wrapper-java-jni_0.30.4-0ubuntu2_amd64.deb) ...
Selecting previously unselected package libsam-java.
Unpacking libsam-java (from .../libsam-java_1.46-1build1_all.deb) ...
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Unpacking picard-tools (from .../picard-tools_1.46-1build1_all.deb) ...
Selecting previously unselected package ttf-dejavu-extra.
Unpacking ttf-dejavu-extra (from .../ttf-dejavu-extra_2.33-2ubuntu1_all.deb) ...
Selecting previously unselected package icedtea-6-jre-cacao.
Unpacking icedtea-6-jre-cacao (from .../icedtea-6-jre-cacao_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
Selecting previously unselected package icedtea-6-jre-jamvm.
Unpacking icedtea-6-jre-jamvm (from .../icedtea-6-jre-jamvm_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
Selecting previously unselected package icedtea-netx-common.
Unpacking icedtea-netx-common (from .../icedtea-netx-common_1.2.3-0ubuntu0.12.04.2_all.deb) ...
Selecting previously unselected package icedtea-netx.
Unpacking icedtea-netx (from .../icedtea-netx_1.2.3-0ubuntu0.12.04.2_amd64.deb) ...
Processing triggers for doc-base ...
Processing 2 added doc-base files...
Processing triggers for man-db ...
Processing triggers for bamfdaemon ...
Rebuilding /usr/share/applications/bamf.index...
Processing triggers for desktop-file-utils ...
Processing triggers for gnome-menus ...
Processing triggers for hicolor-icon-theme ...
Processing triggers for fontconfig ...
Setting up libnss3-1d (3.14.3-0ubuntu0.12.04.1) ...
Setting up tzdata-java (2012e-0ubuntu0.12.04.1) ...
Setting up java-common (0.43ubuntu2) ...
Setting up libgif4 (4.1.6-9ubuntu1) ...
Setting up libsam-java (1.46-1build1) ...
Setting up ttf-dejavu-extra (2.33-2ubuntu1) ...
Setting up icedtea-netx-common (1.2.3-0ubuntu0.12.04.2) ...
Setting up openjdk-6-jre-headless (6b27-1.12.5-0ubuntu0.12.04.1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode.
Setting up ca-certificates-java (20110912ubuntu6) ...
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:spi-ca-2003.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:IGC_A.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:cacert.org.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:TC_TrustCenter__Germany__Class_2_CA.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:Izenpe.com.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:TDC_OCES_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debianST_ACES_CA_X6.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:SecureSign_RootCA11.pem
Adding debianigital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:Juur-SK.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debianigiCert_Assured_ID_Root_CA.pem
Adding debian:spi-cacert-2008.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debianigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:ComSign_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:TC_TrustCenter__Germany__Class_3_CA.pem
Adding debianigital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:TC_TrustCenter_Universal_CA_III.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:SecureTrust_CA.pem
Adding debian:UbuntuOne-Go_Daddy_CA.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Wells_Fargo_Root_CA.pem
Adding debianST_Root_CA_X3.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:Firmaprofesional_Root_CA.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:A-Trust-nQual-03.pem
Adding debianeutsche_Telekom_Root_CA_2.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:ca.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:Certum_Root_CA.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debianigiCert_Global_Root_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:CA_Disig.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:ssl-cert-snakeoil.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:UbuntuOne-Go_Daddy_Class_2_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:Equifax_Secure_eBusiness_CA_2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:Certigna.pem
done.
Setting up libatk-wrapper-java (0.30.4-0ubuntu2) ...
Setting up icedtea-6-jre-cacao (6b27-1.12.5-0ubuntu0.12.04.1) ...
Setting up icedtea-6-jre-jamvm (6b27-1.12.5-0ubuntu0.12.04.1) ...
Setting up openjdk-6-jre-lib (6b27-1.12.5-0ubuntu0.12.04.1) ...
Setting up libatk-wrapper-java-jni (0.30.4-0ubuntu2) ...
Setting up openjdk-6-jre (6b27-1.12.5-0ubuntu0.12.04.1) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode.
Setting up picard-tools (1.46-1build1) ...
Setting up icedtea-netx (1.2.3-0ubuntu0.12.04.2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode.
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
dnascopev@ubuntu:~$

[GenoMax]

so:

sudo apt-get install picard-tools

Yes.

How do I uninstall the previous picard? Thanks

Like this

sudo apt-get remove picard

[cmccabe]

picard installation on ububtu 12.0.4

so:

sudo apt-get install picard-tools

How do I uninstall the previous picard? Thanks

[GenoMax]

You may not have installed the right program.

Plain picard referrs to a "MusicBrainz audiofiles tagger" in ubuntu repository.

picard-tools is what you need https://launchpad.net/ubuntu/+source...d-tools/1.46-1

The version of picard tools in ubuntu repository may be older (v. 1.46). Once you install that package it should be under /usr/bin/picard-tools.

Why don't you download them from source here: http://sourceforge.net/projects/picard/files/

[cmccabe]

I can not the picard directorty and do not know if it installed or what to do next. Thanks.

dnascopev@ubuntu:~$ sudo apt-get install picard
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following extra packages will be installed:
libavcodec53 libavformat53 libavutil51 libfftw3-3 libgsm1 libofa0
libqt4-designer libqt4-help libqt4-scripttools libqt4-test
libqtassistantclient4 libqtwebkit4 libschroedinger-1.0-0 libva1 libvpx1
python-mutagen python-qt4 python-sip
Suggested packages:
libfftw3-dev python-qt4-dbg
The following NEW packages will be installed:
libavcodec53 libavformat53 libavutil51 libfftw3-3 libgsm1 libofa0
libqt4-designer libqt4-help libqt4-scripttools libqt4-test
libqtassistantclient4 libqtwebkit4 libschroedinger-1.0-0 libva1 libvpx1
picard python-mutagen python-qt4 python-sip
0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.3 MB of archives.
After this operation, 73.0 MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://archive.ubuntu.com/ubuntu/ precise/main libgsm1 amd64 1.0.13-3 [29.3 kB]
Get:2 http://security.ubuntu.com/ubuntu/ precise-security/main libavutil51 amd64 4:0.8.6-0ubuntu0.12.04.1 [63.1 kB]
Get:3 http://archive.ubuntu.com/ubuntu/ precise/main libschroedinger-1.0-0 amd64 1.0.11-1 [287 kB]
Get:4 http://security.ubuntu.com/ubuntu/ precise-security/main libavcodec53 amd64 4:0.8.6-0ubuntu0.12.04.1 [2,921 kB]
Get:5 http://archive.ubuntu.com/ubuntu/ precise/main libva1 amd64 1.0.15-4 [38.7 kB]
Get:6 http://archive.ubuntu.com/ubuntu/ precise/main libvpx1 amd64 1.0.0-1 [269 kB]
Get:7 http://archive.ubuntu.com/ubuntu/ precise/main libqtassistantclient4 amd64 4.6.3-3ubuntu2 [14.1 kB]
Get:8 http://archive.ubuntu.com/ubuntu/ precise/main libqtwebkit4 amd64 2.2.1-1ubuntu4 [6,229 kB]
Get:9 http://security.ubuntu.com/ubuntu/ precise-security/main libavformat53 amd64 4:0.8.6-0ubuntu0.12.04.1 [495 kB]
Get:10 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-designer amd64 4:4.8.1-0ubuntu4.4 [3,608 kB]
Get:11 http://archive.ubuntu.com/ubuntu/ precise/main libfftw3-3 amd64 3.3-1ubuntu1 [1,611 kB]
Get:12 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-help amd64 4:4.8.1-0ubuntu4.4 [200 kB]
Get:13 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-scripttools amd64 4:4.8.1-0ubuntu4.4 [220 kB]
Get:14 http://archive.ubuntu.com/ubuntu/ precise/universe libofa0 amd64 0.9.3-4 [55.8 kB]
Get:15 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-test amd64 4:4.8.1-0ubuntu4.4 [60.2 kB]
Get:16 http://archive.ubuntu.com/ubuntu/ precise/main python-sip amd64 4.13.2-1 [74.1 kB]
Get:17 http://archive.ubuntu.com/ubuntu/ precise/main python-qt4 amd64 4.9.1-2ubuntu1 [3,113 kB]
Get:18 http://archive.ubuntu.com/ubuntu/ precise/main python-mutagen all 1.20-1ubuntu1 [84.5 kB]
Get:19 http://archive.ubuntu.com/ubuntu/ precise/universe picard amd64 0.16-2 [886 kB]
Fetched 20.3 MB in 2s (7,144 kB/s)
Selecting previously unselected package libavutil51.
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