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  • Finding putative targets for novel miRNAs produced from miRNA-seq analysis

    Hello,

    I recently used mirAnalyzer to predict novel miRNA's from Illumina sequencing. I was wondering if anyone had suggestions on how to predict the target(s) of these putative miRNAs. The majority of the web-or server-based apps such as, Target Scan, require a named miRNA as input. Other apps that can use sequence as input also require a 3' UTR input for targeting. Thus, I am looking for a way to input miRNA sequence and obtain an output of possible target genes. Any suggestions would be much appreciated!

    Thanks.

  • #2
    Hi,

    I too would like to get possible target genes for the novel miRNAs. Did you find a way to obtain the target genes?

    Thanks

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