Header Leaderboard Ad

Collapse

Is there any information about the EGA data??

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Is there any information about the EGA data??

    hello!!
    I'm now dealing with the " UK10K_NEURO_EDINBURGH" data from European Genome-phenome Archive(EGA)
    https://www.ebi.ac.uk/ega/studies/EGAS00001000117

    I downloaded"EGAD00001000233"and"EGAD00001000317" and the downloaded files are as follows:
    for exapmle,

    file " 7402_4#1.bam " in folder "EGAR00001044664"
    file " 7438_2#7.bam " in folder "EGAR00001045421"
    and
    file " UK10K_EDIN5194723.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008061"
    file " UK10K_EDIN5194748.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008075"

    I am confused about:

    1) What the filename mean?
    For example:
    file "7402_4#1.bam" in the folder "EGAR00001044664"
    what the number "1044664"."7402_4 and #1" mean?

    2) Are there connections between"EGARxxxxxx" and "EGAZxxxxxxx"? and what is the connection?

    Are there some naming rules for EGA data? 

    Any information is greatly appreciated. Many thanks in advance

  • #2
    Since the datasets are not open access you should contact the ega help desk ([email protected]) with these questions (unless there is someone on this forum who has information about the EGA project).

    There is also an additional contact email listed on the page that you have provided a link to above.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      How RNA-Seq is Transforming Cancer Studies
      by seqadmin



      Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
      09-07-2023, 11:15 PM
    • seqadmin
      Methods for Investigating the Transcriptome
      by seqadmin




      Ribonucleic acid (RNA) represents a range of diverse molecules that play a crucial role in many cellular processes. From serving as a protein template to regulating genes, the complex processes involving RNA make it a focal point of study for many scientists. This article will spotlight various methods scientists have developed to investigate different RNA subtypes and the broader transcriptome.

      Whole Transcriptome RNA-seq
      Whole transcriptome sequencing...
      08-31-2023, 11:07 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 09-22-2023, 09:05 AM
    0 responses
    14 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-21-2023, 06:18 AM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-20-2023, 09:17 AM
    0 responses
    13 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 09-19-2023, 09:23 AM
    0 responses
    28 views
    0 likes
    Last Post seqadmin  
    Working...
    X