How to annotate 13 nts sequence

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Palgrave

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Join Date: Aug 2011

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#1

How to annotate 13 nts sequence

09-27-2013, 03:23 AM

I did smallRNA sequencing and detected 3 types of sequences that where 13, 14 and 15 nts long. In total they had about 30 mill reads.
When I run blast I get too many hits to make any sense. How do I go along to annotate these 3 sequences?

Regards
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rflrob

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Join Date: May 2010

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#2

09-27-2013, 09:03 AM

You might try checking out miRBase: http://www.mirbase.org/
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