Originally posted by dpryan
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[2013-10-04 20:31:29] Building Bowtie index from PLncDB.fa
[FAILED]
Error: Couldn't build bowtie index with err = 1
then I ran log, present:
Settings:
Output files: "SP2_131004_2thout/tmp/PLncDB.*.bt2"
Line rate: 6 (line is 64 bytes)
Lines per side: 1 (side is 64 bytes)
Offset rate: 4 (one in 16)
FTable chars: 10
Strings: unpacked
Max bucket size: default
Max bucket size, sqrt multiplier: default
Max bucket size, len divisor: 4
Difference-cover sample period: 1024
Endianness: little
Actual local endianness: little
Sanity checking: disabled
Assertions: disabled
Random seed: 0
Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
SP2_131004_2thout/tmp/PLncDB.fa
Warning: Empty fasta file: 'SP2_131004_2thout/tmp/PLncDB.fa'
Warning: All fasta inputs were empty
Total time for call to driver() for forward index: 00:00:00
Error: Encountered internal Bowtie 2 exception (#1)
Is here means that I have to generate an new index, with exactly the same name as PLncDB, but not previous built genome?
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