Header Leaderboard Ad

Collapse

Problem in installing cummeRbund, Hmisc dependency?

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Problem in installing cummeRbund, Hmisc dependency?

    Hi,
    I am new to this community.
    I am trying to install cummeRbund, and have encountered a number of problems. I read some of the previous threads, installed DBI and RSQLite, have R-2.15.0 intalled in my Ubunto Linux machine. So now when I tried to installed cummeRbund, the 1st error message was that I didn't have the 'Hmisc' package which cummeRbund depends. Then I tried to install Hmisc "Hmisc_3.12-2.tar.gz", here is the problem I really could not solve by my own:

    Error : 'globalVariables' is not an exported object from 'namespace:utils';
    Error : unable to load R code in package ‘Hmisc’;
    ERROR: lazy loading failed for package ‘Hmisc’

    Any suggestion what I should do?

    Thanks,
    Joan

  • #2
    install.packages("Hmisc")
    at your R prompt

    Comment


    • #3
      I already did. Same error message when I tried to install the 'Hmisc' package.
      The problem is what this error message means.
      Thanks,

      Comment


      • #4
        I suspect there is a version mismatch somewhere. I have R 3.0.2 on ubuntu 13.04 - everything's working fine. I installed it from this ppa.

        Comment


        • #5
          I have R 2.15.0 and Ubunto 12.04.
          Joan

          Comment


          • #6
            It's working now. The lattest version of Hmisc 3.12 did not work. I downloaded an earlier version 3.10, now everything worked, and cummeRbund got installed.

            Thanks a lot!
            Joan

            Comment

            Latest Articles

            Collapse

            • seqadmin
              Improved Targeted Sequencing: A Comprehensive Guide to Amplicon Sequencing
              by seqadmin



              Amplicon sequencing is a targeted approach that allows researchers to investigate specific regions of the genome. This technique is routinely used in applications such as variant identification, clinical research, and infectious disease surveillance. The amplicon sequencing process begins by designing primers that flank the regions of interest. The DNA sequences are then amplified through PCR (typically multiplex PCR) to produce amplicons complementary to the targets. RNA targets...
              Today, 01:49 PM
            • seqadmin
              Targeted Sequencing: Choosing Between Hybridization Capture and Amplicon Sequencing
              by seqadmin




              Targeted sequencing is an effective way to sequence and analyze specific genomic regions of interest. This method enables researchers to focus their efforts on their desired targets, as opposed to other methods like whole genome sequencing that involve the sequencing of total DNA. Utilizing targeted sequencing is an attractive option for many researchers because it is often faster, more cost-effective, and only generates applicable data. While there are many approaches...
              03-10-2023, 05:31 AM
            • seqadmin
              Expert Advice on Automating Your Library Preparations
              by seqadmin



              Using automation to prepare sequencing libraries isn’t a new concept, and most researchers are aware that there are numerous benefits to automating this process. However, many labs are still hesitant to switch to automation and often believe that it’s not suitable for their lab. To combat these concerns, we’ll cover some of the key advantages, review the most important considerations, and get real-world advice from automation experts to remove any lingering anxieties....
              02-21-2023, 02:14 PM

            ad_right_rmr

            Collapse

            News

            Collapse

            Topics Statistics Last Post
            Started by seqadmin, 03-17-2023, 12:32 PM
            0 responses
            12 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 03-15-2023, 12:42 PM
            0 responses
            18 views
            0 likes
            Last Post seqadmin  
            Started by seqadmin, 03-09-2023, 10:17 AM
            0 responses
            67 views
            1 like
            Last Post seqadmin  
            Started by seqadmin, 03-03-2023, 12:03 PM
            0 responses
            64 views
            0 likes
            Last Post seqadmin  
            Working...
            X