Header Leaderboard Ad

Collapse

Annovar -filtering

Collapse

Announcement

Collapse

SEQanswers June Challenge Has Begun!

The competition has begun! We're giving away a $50 Amazon gift card to the member who answers the most questions on our site during the month. We want to encourage our community members to share their knowledge and help each other out by answering questions related to sequencing technologies, genomics, and bioinformatics. The competition is open to all members of the site, and the winner will be announced at the beginning of July. Best of luck!

For a list of the official rules, visit (https://www.seqanswers.com/forum/sit...wledge-and-win)
See more
See less
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Annovar -filtering

    Hi All,

    I want to use ANNOVAR to run variant reduction, in order to filter out previously identified SNP's in databases such as 1000G, dbSNP, esp6500.
    However I am not really sure of commands to use.

    Also, is there somewhere I can go and read to figure out what other filters to use?

    Could someone please help me out?
    Thank-you!

  • #2
    Here is a description.

    Comment


    • #3
      Hi,
      Thank-you for the reply. I looked at the link, that kind of gives an idea of how to pick those SNP's that have been identified already.
      I am looking to do just the opposite.
      Could you point me in the right direction...
      Thank-you!
      Amrita

      Comment

      Latest Articles

      Collapse

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 07:14 AM
      0 responses
      4 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 01:08 PM
      0 responses
      6 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 06-01-2023, 08:56 PM
      0 responses
      64 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 06-01-2023, 07:33 AM
      0 responses
      201 views
      0 likes
      Last Post seqadmin  
      Working...
      X