Usually, yes. If it complains, just rename the file and rerun.
-Jonathan
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Thanks Xi!
I read the manual, the test_data has .fq suffix, could I use .txt file directly?Leave a comment:
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Fastq format is ok for tophat. Refer to the tophat manual. Cufflinks uses the output of tophat as input.Leave a comment:
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Data txt file
Hi All,
I want to ask a very basic question concerning the input file format for Tophat and Cufflinks.
My data file is txt file and Fastq format. But where I should start for using Tophat, should I just upload the txt file?
Thanks in advance!
WeiLast edited by Wei-HD; 01-21-2010, 04:20 AM.
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