Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • ARDEN gives wrong sequence result

    Hi,

    I am using ARDEN to make artificial sequence from the original one which is 2.5 GB fasta file the result file is only 500 kb.

    This is the command I am using
    Code:
     python arden-create ./genomeTest/ /data/qdata/public/illumina-genomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.fa -d 21 -o 0 -n maize
    and print out in the terminal

    ########Some stats:########
    DNA length: 569630
    max substitutions: 27125
    #Balanced Mutations: 9206
    #hamming distance REF-ART 18412
    avg. distance: 30.9379752335
    ###########################

    any idea


    Edit:
    The answer to my question is ARDEN only works with one chromosome per time so i can not run it on the whole chromosomes "one file contains the whole genome" at once.
    Last edited by Medhat; 11-19-2013, 05:10 AM.

Latest Articles

Collapse

  • seqadmin
    Choosing Between NGS and qPCR
    by seqadmin



    Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...
    10-18-2024, 07:11 AM
  • seqadmin
    Non-Coding RNA Research and Technologies
    by seqadmin




    Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.

    Nobel Prize for MicroRNA Discovery
    This week,...
    10-07-2024, 08:07 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 11-01-2024, 06:09 AM
0 responses
18 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-30-2024, 05:31 AM
0 responses
18 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-24-2024, 06:58 AM
0 responses
24 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-23-2024, 08:43 AM
0 responses
53 views
0 likes
Last Post seqadmin  
Working...
X